Recent accomplishments of CDFW's scientific community
A tiny transponder is placed inside the body cavity of each female salmon. When the fish lay their eggs, the transponders will be expelled, providing scientists with information on when, where and how successful each spawning female is.
After the salmon are tagged, they are returned to a holding pond while the anesthetic wears off.
CDFW scientists electronically identify and perform an ultrasound on each fish in order to assess their pre-spawning condition.
Each salmon in the project received a tiny identity tag that is entered into a database. The computerized system allows biologists to follow individual fish throughout their life cycle.
A team of scientists read, evaluate and record data for each individual salmon.
On Thursday, May 18, fisheries biologists implanted acoustic transponders into 60 endangered adult spring-run Chinook salmon. The transponders will track their movements and help determine spawning success later this season. The salmon will be released to spawn naturally in the San Joaquin River near Friant over the next three months.
Spring-run Chinook have been absent from the river for many decades. Reintroduction is one of multiple strategies biologists are using to reestablish naturally spawning runs of these fish as part of the San Joaquin River Restoration Project. The project – which is jointly coordinated by CDFW, the Bureau of Reclamation, the California Department of Water Resources, the U.S. Fish and Wildlife Service and the National Oceanic and Atmospheric Administration’s National Marine Fisheries Service – is a comprehensive, long-term effort to restore flows to the San Joaquin River from Friant Dam to the confluence of the Merced River and restore a self-sustaining Chinook fishery while reducing or avoiding adverse water supply impacts from restoration flows.
A total of 120 salmon will be implanted and released at two different times. Biologists will track the fish from each release to determine which is most successful. This release strategy provides the hatchery-raised salmon the opportunity to select their own mates, construct redds (a spawning nest in the stream gravel) and spawn naturally.
CDFW photos by Harry Morse
It does not take a leap of faith to believe that CDFW scientists have gained the upper hand in bolstering the population of yellow-legged frogs in the High Sierra.
Over the past three decades, Sierra Nevada yellow-legged frogs have become imperiled in California due to the two-pronged impact of introduced (non-native) trout and chytridiomycosis, a disease that is affecting amphibians worldwide.
Past introduction of non-native fish, including rainbow trout and golden trout, to benefit sport fishing in the High Sierra took a heavy toll on the species. High-elevation lakes where these frogs once flourished were largely fishless until fish stocking came into vogue. As the years passed, scientists determined that these introduced fish were depopulating the frogs by competing for food sources (primarily insects) and by predation (trout ate both adult frogs and their tadpoles). Chytridiomycosis, which affects many frog species, also impaired the ability of the Sierra Nevada yellow-legged frog’s skin to exchange vital nutrients, which often leads to death.
As a result, Sierra Nevada yellow-legged frogs are believed to have vanished from approximately 92 percent of their historical habitat, and halting and reversing that decline has become an important goal of CDFW, as well as other state and federal entities.
“This is an animal that only lives in the Sierra Nevada,” said Sarah Mussulman, a CDFW senior environmental scientist. “It is one of our unique California species that lives in high-elevation areas, and as an amphibian it serves as an important link between the terrestrial and aquatic ecosystems. This link is especially critical in the low nutrient, granitic basins of the High Sierra, where frogs and tadpoles consume insects and algae and are themselves consumed by a variety of snakes, birds and mammals.”
CDFW recently completed two projects as part of its ongoing efforts to reverse the population decline of Sierra Nevada yellow-legged frogs.
The efforts took place at two sites: Highland Lake and Clyde Lake, located approximately seven miles apart on the Rubicon River in the Desolation Wilderness area of El Dorado County. The projects were completed with federal grant funds earmarked for the recovery of endangered and threatened species (the species is listed as threatened by the State of California and as endangered by the U.S. Fish and Wildlife Service).
Highland Lake, along with its outlet, an unnamed stream, and two small adjacent ponds, supported a small population of rainbow trout when the project began in 2012. Trout abundance had declined in the absence of stocking in recent years but sufficient natural reproduction occurred in the inlet to Highland Lake to sustain the population. CDFW began using gill nets to remove rainbow trout -- the descendants of fish planted in the lake by CDFW from 1935 to 2000 -- in 2012, in partnership with Eldorado National Forest personnel.
During a frog-monitoring survey at Highland Lake in 2016, approximately 800 adult frogs were observed, as compared to a 2003 survey in which only a few tadpoles were observed. Because the frogs have consistently survived in this area despite the presence of chytridiomycosis, scientists believe they have a good chance at persisting in the area for a long time.
“Highland really had a population explosion over the past five years and can be counted as one of the most successful projects of this type ever undertaken,” Mussulman said.
The project at Clyde Lake was smaller and had somewhat different factors.
Golden trout, which frequently have the same negative impacts on Sierra Nevada yellow-legged frogs as rainbow trout, including predation and competition for food sources, were planted by CDFW at Clyde Lake from 1932 through 2000.
Once stocking was halted, the golden trout proved less resilient then the rainbow trout at Highland Lake, due to habitat factors.
“Clyde Lake sits in a north-facing granite bowl bordered by 1,000-foot cliffs, and no flowing streams enter the lake,” explained Mussulman. “There was no spawning habitat, which is likely why golden trout did not persist there after stocking was halted.”
The stream flowing out of Clyde Lake and four nearby ponds did support a small population of golden trout after plants were halted. The fish in the stream and ponds, which are self-sustaining populations, are precluded from moving from the stream into Clyde Lake by a fabricated dam. In 2013, frogs and a few tadpoles were observed in the stream alongside fish, and CDFW began removing the fish from the stream with gill nets to provide additional habitat for the frogs.
Nine years of monitoring data collected by CDFW scientists indicate that the area’s Sierra Nevada yellow-legged frog population, while small, is slowly increasing. Surveyors observed more than 120 frogs in 2016, compared to a low of six observed in 2005. Moreover, in 2016, for the first time, dozens of tadpoles were observed in the newly fish-free lower reaches of the stream.
“It is great to see these populations recovering,” Mussulman said. “It is a great privilege doing this work that helps keep these frogs on the landscape.”
CDFW photos: Highland Lake in the Desolation Wilderness, and a Sierra Nevada yellow-legged frog
CDFW wants to know if, when and where you’ve seen an elk in California – and they’ve just created a new online reporting tool that makes it easy for members of the public to share this information.
CDFW scientists will use the raw data to help guide their efforts to study statewide elk distribution, migration patterns and herd movement, population size estimates, habitat use, health and diseases, and causes of mortality.
“We have limited resources and our scientists cannot scan the entire landscape,” explained CDFW Senior Environmental Scientist Pete Figura. “This tool provides a way for us to leverage the many sightings of the wildlife-watching public. People often get excited when they see elk, and hopefully now they will channel that excitement by reporting the location and time of their sighting to our department.”
There are three subspecies of elk in the state – tule, Rocky Mountain and Roosevelt -- and all three have expanded their range in recent years according to Figura.
CDFW has elk studies underway in the northern part of the state: one is focused on Roosevelt elk in Humboldt and Del Norte counties, and the other is focused on elk in Siskiyou and Modoc counties. Tracking and studying such a large mammal is a complex undertaking as elk herds are wide-ranging, and often graze and browse in areas that are not easily accessible, and there are only so many scientists to monitor their movements.
The launch of the reporting tool is just the latest effort to enhance the management of elk in California. Last year CDFW released a public draft of the Statewide Elk Conservation and Management Plan that addresses historical and current geographic range, habitat conditions and trends, and major factors affecting elk in California.
The plan will provide guidance and direction for setting priorities for elk management efforts statewide. CDFW is reviewing public comments on the plan and will incorporate appropriate changes into the final document prior to its release, which is expected soon.
CDFW Wildlife Branch Chief Kari Lewis has termed the plan an “important milestone” and explained that public feedback is a critical part of shaping the effort, which emphasizes a sharing of resources and collaboration with all parties interested in elk and elk management. This, she said, is essential to effectively managing California’s elk populations.
For more information about elk in California, please visit CDFW’s elk management webpage.
CDFW File Photo. Top photo: Group of Tule Elk.
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Scientists with the California Department of Fish and Wildlife (CDFW) and Oregon State University recently published the results of a population study on fishers (Pekania pennanti) in northern California and southern Oregon. Led by CDFW Wildlife Statistician Dr. Brett Furnas and three coauthors, CDFW Senior Environmental Scientist Richard Callas, CDFW Research Analyst Russ Landers and Dr. Sean Matthews of Oregon State University, the study produced the first-ever robust estimates of density and size of the fisher population in northern California.
“This is the first time we’ve come up with a solid number of fishers, which is a starting point for tracking and monitoring populations,” Furnas said. “One of the most important tools we have used so far to help this species is reintroductions, so now -- with a baseline established and ongoing surveys planned -- we’ll be able to see if the population is really rebounding over time.”
Fishers in northern California and southern Oregon represent the largest remaining population in the Pacific states. The species once ranged from the state of Washington southward through Oregon and California. Currently, fishers occupy only a small portion of their historical range in that region. In California, fishers are found in the northern areas of the state and a small, isolated population occurs in the southern Sierra Nevada Mountains.
CDFW and the U.S. Fish and Wildlife Service have been petitioned on several occasions to list fishers as threatened or endangered under their respective Endangered Species Acts.
In 2016, while considering fishers in the southern Sierra Nevada Mountains of California, the California Fish and Game Commission voted that the petitioned action was warranted in part, choosing to accept the petition in the context of the Southern Sierra Nevada Evolutionarily Significant Unit, and adopted findings to that effect, which were published on May 6, 2016. Although fishers are relatively well-distributed in northern California and in portions of southern Oregon, data from existing surveys and prior studies was used to estimate abundance. This information is critically important to assess the status of fishers and serve as a baseline for conservation efforts.
Furnas and his coauthors used data from camera traps, hierarchical modeling of detections and non-detections of fishers from the cameras, and information about fisher home range size to develop their estimate of population size. They estimated that approximately 3,200 fishers occur within the northern California and southern Oregon study area, with an average density of 5.1 to 8.6 fishers per 100 square kilometers.
Estimating the sizes of wildlife populations is challenging, particularly for species such as the fisher that are difficult to observe and occur over large areas. A final population estimate for the fisher would not have been possible without the cooperation of a variety of federal and tribal agencies, universities and private landowners who shared datasets that were combined to complete the modeling. With these data, Furnas and his coauthors demonstrated that estimating the population size of the fisher at large geographic scales is feasible. They also suggested that the methods used in their research could be used to estimate the abundance of other carnivores, including black bear, gray fox and coyote.
The study was published in the journal Ecosphere. More information / view publication
Restoration project area. CDFW photo by Andrew Hughan.
Yellow and orange indicate restoration areas at the Ocean Ranch Unit of CDFW's Eel River Wildlife Area.
How does one best go about making an already bountiful and bucolic part of the Golden State even better? Sometimes, perhaps paradoxically, it pays to look to the past in order to be forward thinking in the present.
CDFW, Ducks Unlimited, and many partners have undertaken the Ocean Ranch Unit of the Eel River Wildlife Area Integrative Ecosystem Restoration Project Planning Process to enhance the estuarine and coastal dune ecosystem of the Ocean Ranch Unit in Humboldt County
The approximately 2,600-acre Eel River Wildlife Area was acquired to protect and enhance coastal wetland habitat, and was designated as a wildlife area by the California Fish and Game Commission in 1968. The initial decision to undertake an estuary restoration-planning project began more than a decade ago. After several years of monitoring to gather necessary data, Ducks Unlimited completed a feasibility study, funded by CDFW’s Fisheries Restoration Grant Program and the California State Coastal Conservancy, in December 2015.
The primary goal is to restore and expand natural estuarine and dune ecosystem functions, including the recovery and enhancement of native species (including fish, invertebrates, wildlife and plants) and their habitats. These changes should also help mitigate current and future impacts of climate change. Sea level rise will likely result in saltwater inundation further upstream, which is expected to modify habitats (for example, the loss of tidal marsh migration inland) and the size and shape of the estuary.
The project has been a revelation for Michelle Gilroy, a CDFW district fisheries biologist who works primarily in Humboldt and Del Norte counties.
“For the first time in my 30-year fisheries career, which began in the Eel River watershed, I am achieving a long-time goal of mine: To envision, develop and work through to completion, or near completion, a large restoration project,” said Gilroy. “This exciting project and the extraordinary team I am so very fortunate to work with is making that dream a reality – and in the Eel River estuary, one of California’s largest estuaries. It is definitely one of the highlights of my career.”
Improving the connectivity of tidal and freshwater habitats, and controlling or eradicating invasive plants, are key goals of the restoration project.
A feasibility study guiding the project analyzed the potential for expanding tidal functions within 475 of the 933 acres of the unit to aide in the recovery and enhancement of estuarine habitat and native species. Restoration of these essential habitats is vital to the recovery of anadromous salmonid populations in the Eel River, as estuaries provide critical nursery and rearing conditions for juveniles prior to ocean entry.
The unit is located within the Eel River estuary, a mile and a half north of the mouth of the Eel River and approximately four miles northwest of Loleta. The unit is comprised of a diverse set of habitats, including coastal dunes, riparian woodlands, tidal mudflats, tidal slough channels, salt marshes and managed freshwater marshes.
Prior to second-wave human settlements, this portion of the estuary, then inhabited by Native Americans, consisted primarily of salt-marsh habitat dotted with areas of spruce and hardwood forest, and native grasslands. An abundant fishery, which included the prized salmon, along with native plants, provided sustenance for the Wiyot people who lived around Humboldt Bay and the estuary. As Euro-Americans settled this region, however, they largely drove the Wiyot people off their traditional lands and began to repurpose portions of the environment.
By the end of the 1800s, most of the salt marsh and forestlands were drained and converted to farm and grazing land. This conversion of tidal marshes to pastures was done with purpose – but such perceived progress carried an ecological cost.
The construction of levees and tide gates to drain salt marsh increased sedimentation, flooding, and the amount and diversity of habitat and food supply for fish and wildlife declined throughout the estuary. This degraded the prior functioning, highly productive estuary ecosystem. In addition, invasive species now threaten the diversity or abundance of native species through competition for resources, predation, parasitism, interbreeding with native populations, transmitting diseases, or causing physical or chemical changes to the invaded habitat.
Despite these declines, the Eel River delta, which includes the Eel River Wildlife Area, today continues to provide vital habitat for many aquatic and terrestrial organisms, including state and federally threatened and endangered fish, wildlife and plant species, and many state species of special concern. More than 40 species of mammals and 200 species of birds use the delta area and researchers have documented at least 45 fish species in the Eel River estuary alone.
The area provides essential spawning, nursery and feeding grounds to several commercially and recreationally important species, including Dungeness crab. Estuaries are among the most productive and diverse ecosystems in the world and are one of the preferred habitats for young Dungeness crabs.
Dungeness crabs use estuaries as critical nursery habitat in their juvenile stages, as not only a refuge from predation – particularly in estuaries with structural habitat such as eelgrass – but also because of the abundance and diversity of prey provided by estuaries. Dungeness crabs are opportunistic feeders – clams, fish, isopods and amphipods are their preferred food sources, as well as other Dungeness crabs. Their predators include those larger crabs, octopuses, and fish, including salmon, lingcod and various rockfishes.
Wildlife, of course, is not the only form of life to reap the benefits of this region, as humans enjoy a range of outdoor activities, including fishing, bird-watching, boating, hiking and hunting.
The project is expected to begin in the summer of 2019.
CDFW photos and map
Top photo: CDFW Senior Environmental Scientist Kirsten Ramey and Eric Ojerholm of the Pacific States Marine Fisheries Commission.
Partners, Funding and Staff
Ducks Unlimited, in partnership with CDFW staff, has recently secured project planning funds from the California Wildlife Conservation Board, and initial project implementation funds from the NOAA Restoration Center. To complete the restoration design and environmental compliance process, this second phase of restoration planning will consist of a continued CDFW and Ducks Unlimited partnership, with additional assistance from several local consultants and a Technical Advisory Committee (TAC). The TAC includes representatives from the U.S. Army Corps of Engineers, the Bureau of Land Management, U.S. Fish and Wildlife Service, National Marine Fisheries Service, California Coastal Commission, California State Coastal Conservancy, North Coast Regional Water Quality Control Board, California Sea Grant, California Trout, Humboldt County Resource Conservation District, Humboldt State University, Redwood Region Audubon Society, private landowners, and the Wiyot Tribe. Additional project partners include AmeriCorps, Tom Origer and Associates, Pacific Coast Fish, Wildlife and Wetlands Restoration Association, GHD Inc., H.T. Harvey and Associates, Moffatt and Nichol, Northern Hydrology Engineering, Pacific Coast Joint Venture, and the Pacific States Marine Fisheries Commission.
CDFW staff who have served on the project management team include Michelle Gilroy, Allan Renger, Scott Monday, Kirsten Ramey, James Ray, Mark Smelser, Gordon Leppig, Michael van Hattem, Jennifer Olson, Linda Miller, Clare Golec, Charles Bartolotta, Robert Sullivan, Tony LaBanca, Mark Wheetley, Scott Downie, Adam Frimodig, Jeff Dayton, Mike Wallace, Vicki Frey, John Mello, and Karen Kovacs.
Beneath the waters off the California coast are vast forests that are home to an astounding variety of animals. Their sunlit canopies can soar 150 feet from the ocean’s floor. But instead of trees, these forests are made of kelp.
Worldwide, kelp is used in a host of everyday products like toothpaste, pudding, ice cream and even pharmaceuticals. Although kelp is valuable to humans, it is critical to sustaining life for many ocean-dwelling wildlife species ranging from microscopic plankton to sea otters, pelagic birds and predatory fishes. When a kelp forest is depleted, the entire underwater ecosystem can be thrown out of balance. This is why CDFW scientists are tracking and studying the amount of kelp growing in coastal waters.
In 1989, CDFW marine biologists began using aerial surveys to monitor the size of the kelp forests off of California’s coast. A second survey was conducted a decade later, and since 2002, CDFW has made an effort to conduct these surveys annually (although budget issues sometimes require skipping a year).
The surveys are conducted along the entire coastline and offshore of the Channel Islands. CDFW conducted the earliest surveys on its own, but now contracts out for this work. The contractor uses an aircraft with a specialized camera system that picks up the infrared image of the kelp. Those images become Geographic Information System (GIS) shapefiles that capture a snapshot of what the kelp canopy looks like on a given day. The images enable the viewer to see and compare the spatial area of a specific kelp forest over time.
A graph depicting CDFW’s historic aerial kelp survey data is located on the Kelp and Other Marine Algae webpage.
CDFW’s most recent (2016) kelp survey includes the following findings:
Rebecca Flores Miller, a marine environmental scientist with CDFW’s Marine Region office in Monterey, was the coordinator for the 2016 kelp survey.
“Kelp does fluctuate normally, anyway … there is a seasonality with it,” she explains. “However, during El Nino and warm water conditions as we’ve had in the recent past, the canopy doesn’t grow as well.”
Coastal development can also negatively affect the kelp canopy, as it sometimes leads to pollution, increased turbidity (which reduces the light needed for photosynthesis) and siltation (which can hinder growth or bury young kelp). An increase in urchin populations can also have a dramatic impact on kelp, and recently, a wasting disease decreased the numbers of sea stars (a predator of urchins) statewide.
“All of these things are connected within the ecosystem,” Flores Miller says.
Kelp survey data is available to anyone who is interested – members of the general public, other governmental agencies, universities and researchers.
The dataset has many uses, both within and outside of CDFW. It is used during the review process for commercial kelp bed lease requests. It has been a critical piece of the Marine Protected Area planning process. It has been used to help predict the abundance of many kelp forest-dependent species valued by humans, such as abalone. And it has helped scientists understand issues such as the recent abalone die-off in northern California.
CDFW Photos: giant kelp and bull kelp (by Rebecca Flores Miller), and image of kelp forest near Cambria taken during the 2016 aerial kelp survey.
Surveying Ventura River in Ventura County
Snorkel survey in Hollow Tree Creek in Mendocino County
Hollow Tree Creek steelhead
Taking care of California’s fish and wildlife wouldn’t be possible without managing the resources upon which they depend. To that end, CDFW has an entire branch – and many scientific staff – dedicated to the scientific study, and planning and management of water resources.
Within the Water Branch, CDFW’s Instream Flow Program (IFP) is tasked with collecting and contributing data necessary to make all kinds of important management decisions about ecological function, fish rearing, spawning and migration and habitat suitability.
In the simplest terms, “instream flow” refers to the rate of the water running through a waterway in a natural environment. But when one considers all the interests competing for use of that water – fisherman, boaters, farmers, businesses, water districts, and fish and wildlife themselves – the complexity of the subject is evident.
Measured in cubic feet per second (cfs), instream flow can be measured at different times of the year in a specific location in a waterway. The fluctuations can tell scientists quite a bit about the ecosystem health of a watershed. While some watersheds have flowing water throughout the year and others are intermittent it is often the responsibility of water managers to distribute the water between uses. CDFW, a natural resource management agency, is faced with the complex task of identifying and recommending instream flows necessary for supporting natural resources. Determining instream flows are crucial so that aquatic, riparian, and terrestrial resources dependent on water will be considered and protected during water distribution activities.
Guided by the California Water Action Plan, the Public Resources Code and the Fish and Game Code, IFP staff conduct flow studies, collect field data, develop guidelines for quality assurance, conduct outreach and coordinate with other agencies and interested parties on program-related activities.
In the past year, some of IFP staff’s largest projects have included:
To learn more about these specific projects, please download the IFP’s 2017 Year in Review (PDF) document, available on CDFW’s website.
A Featured Scientist Q&A with the IFP manager Robert Holmes is also available on the CDFW Science Institute page.
CDFW photos. Top photo: IFP staff hold a planning meeting prior to a survey on the Ventura River in Ventura County
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