Recent accomplishments of CDFW's scientific community
A tiny transponder is placed inside the body cavity of each female salmon. When the fish lay their eggs, the transponders will be expelled, providing scientists with information on when, where and how successful each spawning female is.
After the salmon are tagged, they are returned to a holding pond while the anesthetic wears off.
CDFW scientists electronically identify and perform an ultrasound on each fish in order to assess their pre-spawning condition.
Each salmon in the project received a tiny identity tag that is entered into a database. The computerized system allows biologists to follow individual fish throughout their life cycle.
A team of scientists read, evaluate and record data for each individual salmon.
On Thursday, May 18, fisheries biologists implanted acoustic transponders into 60 endangered adult spring-run Chinook salmon. The transponders will track their movements and help determine spawning success later this season. The salmon will be released to spawn naturally in the San Joaquin River near Friant over the next three months.
Spring-run Chinook have been absent from the river for many decades. Reintroduction is one of multiple strategies biologists are using to reestablish naturally spawning runs of these fish as part of the San Joaquin River Restoration Project. The project – which is jointly coordinated by CDFW, the Bureau of Reclamation, the California Department of Water Resources, the U.S. Fish and Wildlife Service and the National Oceanic and Atmospheric Administration’s National Marine Fisheries Service – is a comprehensive, long-term effort to restore flows to the San Joaquin River from Friant Dam to the confluence of the Merced River and restore a self-sustaining Chinook fishery while reducing or avoiding adverse water supply impacts from restoration flows.
A total of 120 salmon will be implanted and released at two different times. Biologists will track the fish from each release to determine which is most successful. This release strategy provides the hatchery-raised salmon the opportunity to select their own mates, construct redds (a spawning nest in the stream gravel) and spawn naturally.
CDFW photos by Harry Morse
It does not take a leap of faith to believe that CDFW scientists have gained the upper hand in bolstering the population of yellow-legged frogs in the High Sierra.
Over the past three decades, Sierra Nevada yellow-legged frogs have become imperiled in California due to the two-pronged impact of introduced (non-native) trout and chytridiomycosis, a disease that is affecting amphibians worldwide.
Past introduction of non-native fish, including rainbow trout and golden trout, to benefit sport fishing in the High Sierra took a heavy toll on the species. High-elevation lakes where these frogs once flourished were largely fishless until fish stocking came into vogue. As the years passed, scientists determined that these introduced fish were depopulating the frogs by competing for food sources (primarily insects) and by predation (trout ate both adult frogs and their tadpoles). Chytridiomycosis, which affects many frog species, also impaired the ability of the Sierra Nevada yellow-legged frog’s skin to exchange vital nutrients, which often leads to death.
As a result, Sierra Nevada yellow-legged frogs are believed to have vanished from approximately 92 percent of their historical habitat, and halting and reversing that decline has become an important goal of CDFW, as well as other state and federal entities.
“This is an animal that only lives in the Sierra Nevada,” said Sarah Mussulman, a CDFW senior environmental scientist. “It is one of our unique California species that lives in high-elevation areas, and as an amphibian it serves as an important link between the terrestrial and aquatic ecosystems. This link is especially critical in the low nutrient, granitic basins of the High Sierra, where frogs and tadpoles consume insects and algae and are themselves consumed by a variety of snakes, birds and mammals.”
CDFW recently completed two projects as part of its ongoing efforts to reverse the population decline of Sierra Nevada yellow-legged frogs.
The efforts took place at two sites: Highland Lake and Clyde Lake, located approximately seven miles apart on the Rubicon River in the Desolation Wilderness area of El Dorado County. The projects were completed with federal grant funds earmarked for the recovery of endangered and threatened species (the species is listed as threatened by the State of California and as endangered by the U.S. Fish and Wildlife Service).
Highland Lake, along with its outlet, an unnamed stream, and two small adjacent ponds, supported a small population of rainbow trout when the project began in 2012. Trout abundance had declined in the absence of stocking in recent years but sufficient natural reproduction occurred in the inlet to Highland Lake to sustain the population. CDFW began using gill nets to remove rainbow trout -- the descendants of fish planted in the lake by CDFW from 1935 to 2000 -- in 2012, in partnership with Eldorado National Forest personnel.
During a frog-monitoring survey at Highland Lake in 2016, approximately 800 adult frogs were observed, as compared to a 2003 survey in which only a few tadpoles were observed. Because the frogs have consistently survived in this area despite the presence of chytridiomycosis, scientists believe they have a good chance at persisting in the area for a long time.
“Highland really had a population explosion over the past five years and can be counted as one of the most successful projects of this type ever undertaken,” Mussulman said.
The project at Clyde Lake was smaller and had somewhat different factors.
Golden trout, which frequently have the same negative impacts on Sierra Nevada yellow-legged frogs as rainbow trout, including predation and competition for food sources, were planted by CDFW at Clyde Lake from 1932 through 2000.
Once stocking was halted, the golden trout proved less resilient then the rainbow trout at Highland Lake, due to habitat factors.
“Clyde Lake sits in a north-facing granite bowl bordered by 1,000-foot cliffs, and no flowing streams enter the lake,” explained Mussulman. “There was no spawning habitat, which is likely why golden trout did not persist there after stocking was halted.”
The stream flowing out of Clyde Lake and four nearby ponds did support a small population of golden trout after plants were halted. The fish in the stream and ponds, which are self-sustaining populations, are precluded from moving from the stream into Clyde Lake by a fabricated dam. In 2013, frogs and a few tadpoles were observed in the stream alongside fish, and CDFW began removing the fish from the stream with gill nets to provide additional habitat for the frogs.
Nine years of monitoring data collected by CDFW scientists indicate that the area’s Sierra Nevada yellow-legged frog population, while small, is slowly increasing. Surveyors observed more than 120 frogs in 2016, compared to a low of six observed in 2005. Moreover, in 2016, for the first time, dozens of tadpoles were observed in the newly fish-free lower reaches of the stream.
“It is great to see these populations recovering,” Mussulman said. “It is a great privilege doing this work that helps keep these frogs on the landscape.”
CDFW photos: Highland Lake in the Desolation Wilderness, and a Sierra Nevada yellow-legged frog
Scientists with the California Department of Fish and Wildlife (CDFW) and Oregon State University recently published the results of a population study on fishers (Pekania pennanti) in northern California and southern Oregon. Led by CDFW Wildlife Statistician Dr. Brett Furnas and three coauthors, CDFW Senior Environmental Scientist Richard Callas, CDFW Research Analyst Russ Landers and Dr. Sean Matthews of Oregon State University, the study produced the first-ever robust estimates of density and size of the fisher population in northern California.
“This is the first time we’ve come up with a solid number of fishers, which is a starting point for tracking and monitoring populations,” Furnas said. “One of the most important tools we have used so far to help this species is reintroductions, so now -- with a baseline established and ongoing surveys planned -- we’ll be able to see if the population is really rebounding over time.”
Fishers in northern California and southern Oregon represent the largest remaining population in the Pacific states. The species once ranged from the state of Washington southward through Oregon and California. Currently, fishers occupy only a small portion of their historical range in that region. In California, fishers are found in the northern areas of the state and a small, isolated population occurs in the southern Sierra Nevada Mountains.
CDFW and the U.S. Fish and Wildlife Service have been petitioned on several occasions to list fishers as threatened or endangered under their respective Endangered Species Acts.
In 2016, while considering fishers in the southern Sierra Nevada Mountains of California, the California Fish and Game Commission voted that the petitioned action was warranted in part, choosing to accept the petition in the context of the Southern Sierra Nevada Evolutionarily Significant Unit, and adopted findings to that effect, which were published on May 6, 2016. Although fishers are relatively well-distributed in northern California and in portions of southern Oregon, data from existing surveys and prior studies was used to estimate abundance. This information is critically important to assess the status of fishers and serve as a baseline for conservation efforts.
Furnas and his coauthors used data from camera traps, hierarchical modeling of detections and non-detections of fishers from the cameras, and information about fisher home range size to develop their estimate of population size. They estimated that approximately 3,200 fishers occur within the northern California and southern Oregon study area, with an average density of 5.1 to 8.6 fishers per 100 square kilometers.
Estimating the sizes of wildlife populations is challenging, particularly for species such as the fisher that are difficult to observe and occur over large areas. A final population estimate for the fisher would not have been possible without the cooperation of a variety of federal and tribal agencies, universities and private landowners who shared datasets that were combined to complete the modeling. With these data, Furnas and his coauthors demonstrated that estimating the population size of the fisher at large geographic scales is feasible. They also suggested that the methods used in their research could be used to estimate the abundance of other carnivores, including black bear, gray fox and coyote.
The study was published in the journal Ecosphere. More information / view publication
Beneath the waters off the California coast are vast forests that are home to an astounding variety of animals. Their sunlit canopies can soar 150 feet from the ocean’s floor. But instead of trees, these forests are made of kelp.
Worldwide, kelp is used in a host of everyday products like toothpaste, pudding, ice cream and even pharmaceuticals. Although kelp is valuable to humans, it is critical to sustaining life for many ocean-dwelling wildlife species ranging from microscopic plankton to sea otters, pelagic birds and predatory fishes. When a kelp forest is depleted, the entire underwater ecosystem can be thrown out of balance. This is why CDFW scientists are tracking and studying the amount of kelp growing in coastal waters.
In 1989, CDFW marine biologists began using aerial surveys to monitor the size of the kelp forests off of California’s coast. A second survey was conducted a decade later, and since 2002, CDFW has made an effort to conduct these surveys annually (although budget issues sometimes require skipping a year).
The surveys are conducted along the entire coastline and offshore of the Channel Islands. CDFW conducted the earliest surveys on its own, but now contracts out for this work. The contractor uses an aircraft with a specialized camera system that picks up the infrared image of the kelp. Those images become Geographic Information System (GIS) shapefiles that capture a snapshot of what the kelp canopy looks like on a given day. The images enable the viewer to see and compare the spatial area of a specific kelp forest over time.
A graph depicting CDFW’s historic aerial kelp survey data is located on the Kelp and Other Marine Algae webpage.
CDFW’s most recent (2016) kelp survey includes the following findings:
Rebecca Flores Miller, a marine environmental scientist with CDFW’s Marine Region office in Monterey, was the coordinator for the 2016 kelp survey.
“Kelp does fluctuate normally, anyway … there is a seasonality with it,” she explains. “However, during El Nino and warm water conditions as we’ve had in the recent past, the canopy doesn’t grow as well.”
Coastal development can also negatively affect the kelp canopy, as it sometimes leads to pollution, increased turbidity (which reduces the light needed for photosynthesis) and siltation (which can hinder growth or bury young kelp). An increase in urchin populations can also have a dramatic impact on kelp, and recently, a wasting disease decreased the numbers of sea stars (a predator of urchins) statewide.
“All of these things are connected within the ecosystem,” Flores Miller says.
Kelp survey data is available to anyone who is interested – members of the general public, other governmental agencies, universities and researchers.
The dataset has many uses, both within and outside of CDFW. It is used during the review process for commercial kelp bed lease requests. It has been a critical piece of the Marine Protected Area planning process. It has been used to help predict the abundance of many kelp forest-dependent species valued by humans, such as abalone. And it has helped scientists understand issues such as the recent abalone die-off in northern California.
CDFW Photos: giant kelp and bull kelp (by Rebecca Flores Miller), and image of kelp forest near Cambria taken during the 2016 aerial kelp survey.
Recently at Bay Marine Boatworks in Richmond, CDFW’s Bay Delta Region accepted delivery of a new research boat. Funded by the California Department of Water Resources and the United States Bureau of Reclamation, the 32-foot-long aluminum boat is now part of the fleet dedicated to collecting data for the Interagency Ecological Program (IEP), a consortium of state and federal agencies that have been working together on ecological investigations since the 1970s.
Berthed in Antioch, the boat will be named after a native fish or aquatic invertebrate, and will be christened later this summer. It will be put into service for field work (trawls) mandated for the protection of endangered fishes — especially Delta Smelt and Longfin Smelt — in accordance with state and federal water projects.
The yet-unnamed boat was built and rigged for CDFW specifically to meet the needs of research in the Delta. It features a very sturdy hull and an emphasis on “trawl hydraulics.” Built by Munson in Burlington, Washington, the bright gray boat has a top speed of 25 miles per hour and can carry 4,500 pounds (combined crew and cargo). It has a 10-foot beam (width) that will allow the crew to work safely, and uses two trawl winches for towing nets far behind the boat. The boat’s 473-hp diesel engine uses a special ‘trolling valve’ to tow nets at just one mile per hour. The slow speed is crucial because the nets have very fine mesh designed to catch very small fish.
The vessel is the first new boat that Bay Delta Region's IEP Operations Program has received in 13 years. To avoid increasing the number of boats in the fleet, it replaces a 1995-vintage boat that was far smaller (16 feet) and relegates the Beowulf — a notoriously unreliable 1989-vintage 25-foot trawler with no toilet and very little seating — to the status of back-up boat.
“Water-based science is an essential function for this department, and our biologists put in many long hours on these boats. Their safety is imperative,” said Marty Gingras, IEP program manager. “This new vessel is versatile, cost-efficient, safe and green – and it will play a very important role in our efforts to manage threatened and endangered fish populations in the Delta for years to come.”
Eventually, CDFW hopes to replace other boats in the fleet, including the 50-year-old Striper II, which scientific crews use for striped bass and sturgeon surveys.
The California Department of Fish and Wildlife (CDFW) has completed its annual waterfowl breeding population survey.
Mallards, gadwall and cinnamon teal comprised 54 percent of the ducks observed, down 30 percent from last year. The number of mallards decreased from 263,774 to 198,392 (a decrease of 25 percent) and total ducks decreased from 417,791 to 396,529 (a decrease of five percent).
The most notable decrease occurred in the Sacramento Valley area, where mallards were estimated at a record low of 31,000 (73 percent below the long-term average).
Given the abundant precipitation, one might expect the numbers to be higher. In some parts of the state, it did indeed increase available habitat (uplands and ponds). But in many areas, last winter’s heavy rains largely resulted in deep, fast-flowing water, which is not ideal for dabbling ducks. Other reasons for low duck observations could include winter flooding of nesting habitat that normally remains dry, the late-season flooding of the rice fields in the Sacramento Valley and the conversion of rice fields and pastures to tree crops.
CDFW biologists and warden pilots have conducted this annual survey using fixed-wing aircraft since 1948. This year’s survey was conducted from April 3 through May 4 in the Central Valley, and May 9-10 in northeastern California. The population estimates are for the surveyed areas only, which include the majority of the suitable duck nesting habitat in the state. Surveyed areas include wetland and agricultural areas in northeastern California, throughout the Central Valley, the Suisun Marsh and some coastal valleys.
The full Breeding Population Survey Report can be found at www.wildlife.ca.gov/conservation/birds/waterfowl.
The majority of California’s wintering duck population originates from breeding areas surveyed by the U.S. Fish and Wildlife Service (USFWS) in Alaska and Canada. Those survey results should be available in early August. CDFW survey information, along with similar data from other Pacific Flyway states, is used by the USFWS and the Pacific Flyway Council when setting hunting regulations for the Pacific Flyway states, including California.
The California Department of Fish and Wildlife (CDFW) recently launched the first phase of a multi-year study of tule elk in Colusa and Lake counties. In partnership with the University of California, Davis and the Rocky Mountain Elk Foundation, and with the assistance of capture specialists from Leading Edge Aviation, researchers used helicopter net guns to capture and place satellite collars on 45 tule elk.
The technique of using DNA extracted from fecal pellets to study wildlife populations is a relatively new, non-invasive approach that minimally disturbs animals and enables surveys in low-visibility habitats where sight-based surveys would be relatively ineffective. It is also less costly than other survey methods, and therefore can be used more frequently.
While fecal DNA analysis has been used to estimate abundance and other population parameters in deer herds in California since 2011, this study will be the first application of the technique to free-ranging tule elk. The study results will guide future elk conservation planning efforts.
Tule elk are a native subspecies of elk unique to California. Prior to the arrival of European settlers, they numbered more than half a million statewide, but the population rapidly declined in the mid-1800s due to unregulated market hunting and habitat loss. In 1875, a ranch owner in Kern County took efforts to protect the last remaining tule elk and allowed them to multiply on his property, likely saving them from extirpation.
Since 1975, CDFW has captured and relocated more than 1,500 elk. As a result, there are an estimated 5,100-plus tule elk distributed in 22 herds throughout California today. See more information about the distribution, range and history of this unique animal in California.
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