Recent accomplishments of CDFW's scientific community
Native to the California coast and the California/Nevada state line, the Myrtle’s silverspot butterfly feeds on the nectar of the monardella flowers.
One of 33 species of birds listed as threatened or endangered by the State of California or the federal government, the western snowy plover is in jeopardy of disappearing from the dunes.
in 2017, two years after treatment, the southwest side of the herbicide treatment area shows little regrowth of invasive plants.
Sandy dunes along the California coast often feature hardy European beachgrass and a succulent, freeway iceplant, that many assume is part of the native flora. However, these groundcover plants were originally introduced in the 1800s by Gold Rush settlers who were hoping to keep sand from moving to the nearby roads, railroads and land. Today, they are invasive species that out-compete the native plants and the animals that live there.
Over the years, the invasives took over the native Tidestrom lupine and beach layia, causing them to be placed on the federally endangered species list. The endangered Myrtle’s silverspot butterfly and the threatened snowy plover are dependent on native plants like these, and today, they too are in jeopardy of disappearing from the area.
“Snowy plovers naturally select open areas to nest so that they can more easily spot predators,” said CDFW Environmental Scientist Laird Henkel. “The European beachgrass spreads quickly making the dunes less desirable as a place for these birds to nest.”
Scientists determined that removing these invasive plants would be the best way to restore the dunes and the ecosystem that depends on them. To this end, CDFW awarded $54,000 in Environmental Enhancement funds to a project on the Point Reyes North Great Beach, located in Marin County, to restore the native sand dune plants on a 13-acre area in 2015. The fund committee selected the Point Reyes application because of the success of their previous dune restoration projects.
Point Reyes National Seashore staff oversaw the removal of the invasive plants on the dunes. Their contractors spray-treated the dunes with an herbicide and uprooted the invasives by hand; they worked during times of low winds and no rain, to protect other natural plants, wildlife, nearby farms and the public from overspray.
Point Reyes scientists monitored the treated area with an easy-to-use mapping tool called photo point monitoring – an effective method of monitoring vegetation and ecosystem change. Visual surveys and the mapping program showed just a one-to-three percent regrowth of the invasive plants over time, while previous restoration projects showed much more regrowth.
“The project area represents a vital link between earlier restoration efforts near Abbotts Lagoon and new restoration efforts at the AT&T cell tower area, enabling the park to move closer towards its goal of several miles of dune habitat not wiped out by invasive plants such as European beachgrass and iceplant,” said Point Reyes National Seashore Ecologist Lorraine Parsons.
CDFW-OSPR and the Point Reyes staff consider the project’s first objective – eradicating invasive European beachgrass and ice plant – a success. Earlier this year, scientists noticed in treated areas the reappearance of wild cucumber. The reappearance of other native plants such as the mock heather, California blackberry and yarrow, and wildlife is the second objective, the success of which will be determined over time. Other treated areas in the region show beachgrass breakdown and increased native dune scrub and mat species after six years.
Photos courtesy of Point Reyes National Seashore and the U.S. Fish and Wildlife Service.
Top photo: The Point Reyes National Seashore staff oversee contractors spray-treating the dunes with an herbicide.
If you’re an avid marine sport angler, you have most likely seen the smiling faces and brown polo shirts of California Recreational Fisheries Survey (CRFS) samplers. Since its inception in 2004, CRFS has grown into one of the state’s largest and most important survey efforts. Survey samplers are tasked with collecting data about both recreational fishing catch and effort.
Annually, CRFS samplers make direct contact with 68,000 fishing parties at over 400 sampling sites between the California-Oregon state line to the California-Mexico border. A separate but related telephone survey effort contacts an additional 26,000 anglers. A program of this large scale is necessary because recreational fishing effort and success rates are highly dynamic – a large sample size is needed to adequately estimate catch and effort. Recreational fishing effort is also very challenging to predict, as it can be affected by many factors (weather, gas prices, time of year, fishing seasons, etc.). But the recreational sector accounts for a significant portion of overall marine harvest, so it’s essential to collect that data to produce reliable estimates of harvest.
CRFS is part of a larger effort to estimate recreational catch and effort on the west coast and is integral to the national effort conducted by the National Marine Fisheries Service’s Marine Recreational Information Program. This partnership allows CRFS methods to be periodically peer reviewed by expert consultants throughout the country. This review provides certification that the methods meet or exceed national standards and fisheries management needs, and can recommend the use of new methods to address changing needs or to capture emerging fisheries.
There are three parts to the survey. The first is the field sampling component. This consists of in-person interviews conducted for four different fishing modes – beaches and banks, man-made structures, private/rental boats, and commercial passenger fishing vessels. Field survey questions are specific to catch and effort data during daylight hours at publicly accessible sites. The second part of the survey is the telephone survey. Anglers are randomly selected monthly through the state’s online Automated License Data System (ALDS) and asked about effort data (the number of fishing trips taken) at beach and bank sites. The telephone survey also collects data from private boats returning to sites not sampled during the field survey, and private boats returning at night. The third part of the survey is collection of data from commercial passenger fishing vessel logs. Captains submit this information for every trip, and the data is used together with field sampling data to estimate overall fishing effort.
All of this information is used in many ways. In addition to CDFW, the Fish and Game Commission and the Pacific Fishery Management Council use the data to:
How can you help? There are two ways! If you encounter a CRFS sampler in the field, please cooperate and answer the interview questions truthfully. Take the time to allow the sampler to examine and measure any catch. Recreational anglers, particularly those who fish frequently, are more likely to encounter CRFS samplers. Every fishing trip is unique — different target species, success rates, different locations, different gear, etc. — so we ask anglers, “Even if you have completed this survey before, please cooperate each time you are asked!”
Secondly, if you receive a phone call, please say “yes” to the CRFS telephone surveyor. Data collected through this telephone survey is used to estimate fishing effort that cannot be estimated any other way.
Personal contact information is always kept confidential, and the information that is collected becomes part of a public database. To learn more about the CRFS, access the database or download related flyers and brochures, please visit www.wildlife.ca.gov/Conservation/Marine/CRFS.
Restoration project area. CDFW photo by Andrew Hughan.
Yellow and orange indicate restoration areas at the Ocean Ranch Unit of CDFW's Eel River Wildlife Area.
How does one best go about making an already bountiful and bucolic part of the Golden State even better? Sometimes, perhaps paradoxically, it pays to look to the past in order to be forward thinking in the present.
CDFW, Ducks Unlimited, and many partners have undertaken the Ocean Ranch Unit of the Eel River Wildlife Area Integrative Ecosystem Restoration Project Planning Process to enhance the estuarine and coastal dune ecosystem of the Ocean Ranch Unit in Humboldt County
The approximately 2,600-acre Eel River Wildlife Area was acquired to protect and enhance coastal wetland habitat, and was designated as a wildlife area by the California Fish and Game Commission in 1968. The initial decision to undertake an estuary restoration-planning project began more than a decade ago. After several years of monitoring to gather necessary data, Ducks Unlimited completed a feasibility study, funded by CDFW’s Fisheries Restoration Grant Program and the California State Coastal Conservancy, in December 2015.
The primary goal is to restore and expand natural estuarine and dune ecosystem functions, including the recovery and enhancement of native species (including fish, invertebrates, wildlife and plants) and their habitats. These changes should also help mitigate current and future impacts of climate change. Sea level rise will likely result in saltwater inundation further upstream, which is expected to modify habitats (for example, the loss of tidal marsh migration inland) and the size and shape of the estuary.
The project has been a revelation for Michelle Gilroy, a CDFW district fisheries biologist who works primarily in Humboldt and Del Norte counties.
“For the first time in my 30-year fisheries career, which began in the Eel River watershed, I am achieving a long-time goal of mine: To envision, develop and work through to completion, or near completion, a large restoration project,” said Gilroy. “This exciting project and the extraordinary team I am so very fortunate to work with is making that dream a reality – and in the Eel River estuary, one of California’s largest estuaries. It is definitely one of the highlights of my career.”
Improving the connectivity of tidal and freshwater habitats, and controlling or eradicating invasive plants, are key goals of the restoration project.
A feasibility study guiding the project analyzed the potential for expanding tidal functions within 475 of the 933 acres of the unit to aide in the recovery and enhancement of estuarine habitat and native species. Restoration of these essential habitats is vital to the recovery of anadromous salmonid populations in the Eel River, as estuaries provide critical nursery and rearing conditions for juveniles prior to ocean entry.
The unit is located within the Eel River estuary, a mile and a half north of the mouth of the Eel River and approximately four miles northwest of Loleta. The unit is comprised of a diverse set of habitats, including coastal dunes, riparian woodlands, tidal mudflats, tidal slough channels, salt marshes and managed freshwater marshes.
Prior to second-wave human settlements, this portion of the estuary, then inhabited by Native Americans, consisted primarily of salt-marsh habitat dotted with areas of spruce and hardwood forest, and native grasslands. An abundant fishery, which included the prized salmon, along with native plants, provided sustenance for the Wiyot people who lived around Humboldt Bay and the estuary. As Euro-Americans settled this region, however, they largely drove the Wiyot people off their traditional lands and began to repurpose portions of the environment.
By the end of the 1800s, most of the salt marsh and forestlands were drained and converted to farm and grazing land. This conversion of tidal marshes to pastures was done with purpose – but such perceived progress carried an ecological cost.
The construction of levees and tide gates to drain salt marsh increased sedimentation, flooding, and the amount and diversity of habitat and food supply for fish and wildlife declined throughout the estuary. This degraded the prior functioning, highly productive estuary ecosystem. In addition, invasive species now threaten the diversity or abundance of native species through competition for resources, predation, parasitism, interbreeding with native populations, transmitting diseases, or causing physical or chemical changes to the invaded habitat.
Despite these declines, the Eel River delta, which includes the Eel River Wildlife Area, today continues to provide vital habitat for many aquatic and terrestrial organisms, including state and federally threatened and endangered fish, wildlife and plant species, and many state species of special concern. More than 40 species of mammals and 200 species of birds use the delta area and researchers have documented at least 45 fish species in the Eel River estuary alone.
The area provides essential spawning, nursery and feeding grounds to several commercially and recreationally important species, including Dungeness crab. Estuaries are among the most productive and diverse ecosystems in the world and are one of the preferred habitats for young Dungeness crabs.
Dungeness crabs use estuaries as critical nursery habitat in their juvenile stages, as not only a refuge from predation – particularly in estuaries with structural habitat such as eelgrass – but also because of the abundance and diversity of prey provided by estuaries. Dungeness crabs are opportunistic feeders – clams, fish, isopods and amphipods are their preferred food sources, as well as other Dungeness crabs. Their predators include those larger crabs, octopuses, and fish, including salmon, lingcod and various rockfishes.
Wildlife, of course, is not the only form of life to reap the benefits of this region, as humans enjoy a range of outdoor activities, including fishing, bird-watching, boating, hiking and hunting.
The project is expected to begin in the summer of 2019.
CDFW photos and map
Top photo: CDFW Senior Environmental Scientist Kirsten Ramey and Eric Ojerholm of the Pacific States Marine Fisheries Commission.
Partners, Funding and Staff
Ducks Unlimited, in partnership with CDFW staff, has recently secured project planning funds from the California Wildlife Conservation Board, and initial project implementation funds from the NOAA Restoration Center. To complete the restoration design and environmental compliance process, this second phase of restoration planning will consist of a continued CDFW and Ducks Unlimited partnership, with additional assistance from several local consultants and a Technical Advisory Committee (TAC). The TAC includes representatives from the U.S. Army Corps of Engineers, the Bureau of Land Management, U.S. Fish and Wildlife Service, National Marine Fisheries Service, California Coastal Commission, California State Coastal Conservancy, North Coast Regional Water Quality Control Board, California Sea Grant, California Trout, Humboldt County Resource Conservation District, Humboldt State University, Redwood Region Audubon Society, private landowners, and the Wiyot Tribe. Additional project partners include AmeriCorps, Tom Origer and Associates, Pacific Coast Fish, Wildlife and Wetlands Restoration Association, GHD Inc., H.T. Harvey and Associates, Moffatt and Nichol, Northern Hydrology Engineering, Pacific Coast Joint Venture, and the Pacific States Marine Fisheries Commission.
CDFW staff who have served on the project management team include Michelle Gilroy, Allan Renger, Scott Monday, Kirsten Ramey, James Ray, Mark Smelser, Gordon Leppig, Michael van Hattem, Jennifer Olson, Linda Miller, Clare Golec, Charles Bartolotta, Robert Sullivan, Tony LaBanca, Mark Wheetley, Scott Downie, Adam Frimodig, Jeff Dayton, Mike Wallace, Vicki Frey, John Mello, and Karen Kovacs.
Kerstin Wasson is leading the Olympia oyster restoration at Elkhorn Slough. Kerstin Wasson photo.
Scientists are working hard so that a new generation of Olympia oysters may one day line the mudflats at the Elkhorn Slough Reserve.
Volunteers Ken Pollak and Celeste Stanik join Dr. Chela Zabin to improve the native oyster habitat at Elkhorn Slough. Kerstin Wasson photo.
Suspended gaper clam shells hang in aerated laboratory tanks, home to what scientists hope will be a new generation of Olympia oysters at the Elkhorn Slough Reserve.
Graduate student Dan Gossard, at CSU’s Moss Landing Marine Laboratories, shows off one of the clam shell “mobiles” on which the Olympia oyster larvae will attach when suspended in aerated tanks.
Kerstin Wasson points out Olympia oysters along the banks of the Elkhorn Slough Ecological Reserve in Monterey County.
For the first time in California history, scientists are turning to shellfish farming techniques to restore native oyster populations.
The groundbreaking research is taking place with Olympia oysters at CDFW’s Elkhorn Slough National Estuarine Research Reserve in Monterey County, in partnership with the California State University’s nearby Moss Landing Marine Laboratories and its new Center for Aquaculture.
Olympia oysters and other shellfish were once so abundant at Elkhorn Slough that Native Americans living there had multiple processing centers along the estuary’s banks to handle their harvest. Olympia oysters have disappeared altogether from many places along the California coast and their numbers at Elkhorn Slough have dwindled so low – estimated today at just a few thousand oysters – that scientists fear they may no longer be able to reproduce in the wild. Not since 2012, they say, have Elkhorn Slough’s wild oysters produced any offspring.
A combination of factors is believed to have caused the population drop over time, including poor water quality because of agricultural runoff from nearby farms and alterations to the landscape and tidal flow from generations of farming and other human activity prior to the area becoming protected in a series of conservation purchases beginning in 1971. An infusion of freshwater from last year’s rainy winter caused a severe oyster die-off and spurred biologists into action.
“This is an iconic species in our estuary in danger of disappearing,” said Kerstin Wasson, Research Coordinator at Elkhorn Slough, where she has worked for 17 years with funding from the National Oceanic and Atmospheric Administration (NOAA), the federal partner in the Elkhorn Slough Reserve. “These oysters fed native people here for 7,000 years.”
In late August, dozens of Olympia oysters were gathered and brought to the Moss Landing Marine Laboratories, where 20 spawned successfully. A few hundred thousand of their microscopic offspring are now swimming in large, circular laboratory tanks and attaching themselves to gaper clam shells suspended on fishing line from the top of the tanks. The clam shells bearing young oysters will be bound together into makeshift reefs and returned to Elkhorn Slough early in 2018 to bolster the native population.
The research is being led by a small group of scientists, including Wasson and graduate student Dan Gossard with funding provided by the Palo Alto-based Anthropocene Institute. These are uncharted waters for California scientists, however, and a major assist is coming from the aquaculture industry itself. Peter Hain of the Monterey Abalone Company has worked closely with the two researchers to set up the laboratory facility for the Olympia oysters and help with their care and feeding.
Due partly to their small size – an individual Olympia oyster is about the size of a 50-cent coin – and slow growth, Olympia oysters hold little appeal and little potential profit for most commercial oyster farmers who focus on larger Pacific varieties, many native to Japan. Taylor Shellfish Farms in Washington State is the only known commercial producer of Olympia oysters.
Wasson welcomes interest and support from aquaculture and hopes growers might one day add the native oyster to their operations. She believes even a niche commercial market for Olympia oysters could have positive implications for wild populations, enhancing recruitment, broadening scientific knowledge and a general appreciation for the native mollusk by the public.
Other efforts to save wild oyster populations in California and elsewhere have focused on building jetty-like artificial reefs constructed from oyster shell contained in plastic mesh.
Wasson prefers that more natural materials be used as part of the oyster restoration efforts underway at Elkhorn Slough, creating small clusters of oysters rising above the mudflats.
“I want this place to look like it did 200 or even 2,000 years ago,” she said.
Top photo: A huge influx of fresh water during winter 2017 resulted in an Olympia oyster die-off and spurred biologists into action.
Staff of several wildlife agencies carry light-footed Ridgway’s rails (previously known as light-footed clapper rails) to Batiquitos Lagoon Ecological Reserve.
A light-footed Ridgway’s rail is banded before release into Batiquitos Lagoon Ecological Reserve.
The Ridgway’s rail is a grayish-brown, chicken-sized bird with a long, downward curving bill and a conspicuous whitish rump. Previously known as the clapper rail, the species name was changed in 2014 to honor ornithologist Robert Ridgway. Three subspecies of Ridgway’s rail are resident in California, all of which depend on mudflats or very shallow water (wetland habitat) where there is both forage and taller plant material to provide cover at high tide. They rely on marsh plants such as cordgrass and pickleweed for breeding and feeding.
One subspecies, the light-footed Ridgway’s rail, was once abundant in the Southern California wetlands, but fell to near extinction in the 1980s as their historical habitats were displaced by housing developments. Today, they have a chance to repopulate, buoyed by recent wetland restoration projects by the California Department of Fish and Wildlife (CDFW) and “Team Rail,” a group that has been dedicated to the recovery of this federal- and state-listed marsh bird for more than a decade.
Team Rail is comprised of scientific staff from CDFW, the U.S. Fish and Wildlife Service (USFWS), the U.S. Navy, three zoological breeding centers (SeaWorld San Diego, the San Diego Zoo Safari Park, and the Living Coast Discovery Center) and the Huntington Beach Wetlands Conservancy. Thanks to their efforts, the 2017 rail population reached 514 pairs in the wild. Each rail release is a step closer to achieving the 1985 Light-Footed Clapper Rail Recovery Plan objective of having 800 breeding pairs in California.
Most recently, five light-footed Ridgway’s rails were released into the Batiquitos Lagoon Ecological Reserve in San Diego County. This release consisted of two mated pairs and three offspring produced by one of the pairs. Three of the adults are retired breeders from the zoological breeding program and are part of a rotation plan to reintroduce retired breeders back into the wild. The release of these individuals will contribute genetic diversity to this highly endangered marsh bird population. Rails bred in zoological facilities were released into Batiquitos Lagoon in 2004 and 2005 (eight rails each year), in 2013 (six rails), 2014 (12 rails), and 2015 (seven rails).
“Given that State Ecological Reserves are set aside for the conservation of threatened, rare and endangered species, and rail releases are targeted for wetlands with small subpopulations (fewer than 50 breeding pairs), Batiquitos Lagoon is an ideal location for the release of Ridgway’s rails,” explained CDFW Senior Environmental Scientist (Specialist) Nancy Frost. “For over a decade, CDFW has supported numerous research and monitoring projects for this species, and we are proud to be a partner in their recovery.”
The state-owned Batiquitos Lagoon is managed by CDFW and is one of the few remaining tidal wetlands on the Southern California coast. Located in the city of Carlsbad, it consists of 543 acres with a drainage basin of about 55,000 acres. It is home to several threatened and endangered birds, insects, plants, fish and mammals and is also designated as a State Marine Conservation Area under the Marine Life Protection Act.
Top photo: A light-footed Ridgway’s rail flies away after being released at Batiquitos Lagoon Ecological Reserve in San Diego County.
Surveying Ventura River in Ventura County
Snorkel survey in Hollow Tree Creek in Mendocino County
Hollow Tree Creek steelhead
Taking care of California’s fish and wildlife wouldn’t be possible without managing the resources upon which they depend. To that end, CDFW has an entire branch – and many scientific staff – dedicated to the scientific study, and planning and management of water resources.
Within the Water Branch, CDFW’s Instream Flow Program (IFP) is tasked with collecting and contributing data necessary to make all kinds of important management decisions about ecological function, fish rearing, spawning and migration and habitat suitability.
In the simplest terms, “instream flow” refers to the rate of the water running through a waterway in a natural environment. But when one considers all the interests competing for use of that water – fisherman, boaters, farmers, businesses, water districts, and fish and wildlife themselves – the complexity of the subject is evident.
Measured in cubic feet per second (cfs), instream flow can be measured at different times of the year in a specific location in a waterway. The fluctuations can tell scientists quite a bit about the ecosystem health of a watershed. While some watersheds have flowing water throughout the year and others are intermittent it is often the responsibility of water managers to distribute the water between uses. CDFW, a natural resource management agency, is faced with the complex task of identifying and recommending instream flows necessary for supporting natural resources. Determining instream flows are crucial so that aquatic, riparian, and terrestrial resources dependent on water will be considered and protected during water distribution activities.
Guided by the California Water Action Plan, the Public Resources Code and the Fish and Game Code, IFP staff conduct flow studies, collect field data, develop guidelines for quality assurance, conduct outreach and coordinate with other agencies and interested parties on program-related activities.
In the past year, some of IFP staff’s largest projects have included:
To learn more about these specific projects, please download the IFP’s 2017 Year in Review (PDF) document, available on CDFW’s website.
A Featured Scientist Q&A with the IFP manager Robert Holmes is also available on the CDFW Science Institute page.
CDFW photos. Top photo: IFP staff hold a planning meeting prior to a survey on the Ventura River in Ventura County
Beneath the waters off the California coast are vast forests that are home to an astounding variety of animals. Their sunlit canopies can soar 150 feet from the ocean’s floor. But instead of trees, these forests are made of kelp.
Worldwide, kelp is used in a host of everyday products like toothpaste, pudding, ice cream and even pharmaceuticals. Although kelp is valuable to humans, it is critical to sustaining life for many ocean-dwelling wildlife species ranging from microscopic plankton to sea otters, pelagic birds and predatory fishes. When a kelp forest is depleted, the entire underwater ecosystem can be thrown out of balance. This is why CDFW scientists are tracking and studying the amount of kelp growing in coastal waters.
In 1989, CDFW marine biologists began using aerial surveys to monitor the size of the kelp forests off of California’s coast. A second survey was conducted a decade later, and since 2002, CDFW has made an effort to conduct these surveys annually (although budget issues sometimes require skipping a year).
The surveys are conducted along the entire coastline and offshore of the Channel Islands. CDFW conducted the earliest surveys on its own, but now contracts out for this work. The contractor uses an aircraft with a specialized camera system that picks up the infrared image of the kelp. Those images become Geographic Information System (GIS) shapefiles that capture a snapshot of what the kelp canopy looks like on a given day. The images enable the viewer to see and compare the spatial area of a specific kelp forest over time.
A graph depicting CDFW’s historic aerial kelp survey data is located on the Kelp and Other Marine Algae webpage.
CDFW’s most recent (2016) kelp survey includes the following findings:
Rebecca Flores Miller, a marine environmental scientist with CDFW’s Marine Region office in Monterey, was the coordinator for the 2016 kelp survey.
“Kelp does fluctuate normally, anyway … there is a seasonality with it,” she explains. “However, during El Nino and warm water conditions as we’ve had in the recent past, the canopy doesn’t grow as well.”
Coastal development can also negatively affect the kelp canopy, as it sometimes leads to pollution, increased turbidity (which reduces the light needed for photosynthesis) and siltation (which can hinder growth or bury young kelp). An increase in urchin populations can also have a dramatic impact on kelp, and recently, a wasting disease decreased the numbers of sea stars (a predator of urchins) statewide.
“All of these things are connected within the ecosystem,” Flores Miller says.
Kelp survey data is available to anyone who is interested – members of the general public, other governmental agencies, universities and researchers.
The dataset has many uses, both within and outside of CDFW. It is used during the review process for commercial kelp bed lease requests. It has been a critical piece of the Marine Protected Area planning process. It has been used to help predict the abundance of many kelp forest-dependent species valued by humans, such as abalone. And it has helped scientists understand issues such as the recent abalone die-off in northern California.
CDFW Photos: giant kelp and bull kelp (by Rebecca Flores Miller), and image of kelp forest near Cambria taken during the 2016 aerial kelp survey.
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